Comprehensive Guide to HPLC Sample Pretreatment – Filtration, Extraction, and Derivatization
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HPLC Sample Pretreatment – Step-by-Step Guide

Oct. 21st, 2025
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Sample Pretreatment Overview

Sample pretreatment includes all operations before injection. Besides weighing, dissolving, and dilution, it also involves the following steps:

  • Filtration
  • Extraction
  • Derivatization (pre-column derivatization)
  • Liquid chromatography (low-pressure column chromatography)

Pretreatment can be performed manually or automated.  Are you familiar with sample pretreatment?


Derivatization

Some samples still cannot be directly injected after pretreatment. Derivatization is required to make compounds without UV absorption or fluorescence detectable by UV or fluorescence detectors.

  • Improves sensitivity
  • Enhances separation (quality change)

Possible issues include sample loss, contamination, incomplete reactions, or multiple by-products, which may affect accuracy or introduce errors.

Sample Filtration

LC samples must be uniform and particle-free; particles may damage the injector or block the column. Steps include:

  • Shake the sample before injection and check for particles, turbidity, or emulsions
  • If particles are observed, filter the sample using a membrane that can retain ≥0.15μm particles

Potential issues: sample contamination, adsorption reducing component concentration, and solvent evaporation causing errors.

Extraction Methods

Extraction separates analytes from co-solvents or removes interfering substances (e.g., proteins). Organic solvents should be low-toxicity, volatile, low in impurities, and dissolve the sample well.

Common solvents: diethyl ether, ethyl acetate, dichloromethane, chloroform, benzene, or mixtures.

After extraction, samples can be injected directly or concentrated to increase analyte concentration and sensitivity.

Water-Soluble Sample Extraction

  1. Acidic components and salts: extract impurities with organic solvent, adjust to acidic, then extract or inject; or dry under N₂ and dissolve in appropriate solvent before injection.
  2. Basic components and salts: extract impurities with organic solvent, adjust to basic, then extract or inject; or dry under N₂ and dissolve in appropriate solvent before injection.
  3. Neutral components: extract impurities with organic solvent, then analyze directly by reversed-phase chromatography.


Fat-Soluble Sample Extraction

Extract with organic solvent or inject directly; or dry under N₂ and dissolve in appropriate solvent before injection.


Contamination Sources

Potential sources of contamination in analysis:

Contamination Type

Source

Prevention Measures

Environmental

Harmful gases, dust, aerosols

Keep instrument room isolated, clean; install AC; control humidity <70%; prevent moisture, corrosion, vibration

Containers

Glass, ceramic, quartz, plastic labware

Select appropriate containers per sample type; clean thoroughly

Reagents

Non-chromatography-grade reagents

Use chromatography-grade, high-purity, or analytical-grade reagents


Standard Solution Preparation

  • Prepare internal standard solution first; use same batch in standards and samples to reduce errors
  • Substances must be chromatography-grade and stable
  • Store standard solutions in brown bottles at low temperature
  • For vitamins, use brown volumetric flasks or protect from light


Common Problems in Sample Pretreatment and Solutions

Problem

Cause

Solution

Unrelated peaks in chromatogram

Filter contamination

  1. Soak filter in sample solvent and test injection

  2. Change filter type

  3. Use alternate cleaning techniques

Low peak response (especially low-concentration samples)

Adsorption on filter surface

  1. Change filter type

  2. Process all samples under same conditions

  3. Use alternate cleaning techniques

Low recovery

Incomplete extraction

  1. Increase extraction time, use hot solvent

  2. Adjust cleaning method

Broadened peaks, shortened column lifetime

Sample interference and contamination

Improve cleaning method

Poor precision

Incomplete recovery

  1. Optimize or replace derivatization, separation, extraction, or other conditions

  2. Use automated handling to improve precision

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